PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000362243
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 287aa    MW: 31137.4 Da    PI: 4.4807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000362243genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019260283123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ C+ksF++   L +H +  H
  MDP0000362243 260 HSCKTCSKSFNSDGALSSHNKAkH 283
                    79*****************88766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.637260287IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFWGVEVKA GEPLKVVPEE SYVIHLSQAT LGELKKGGDQ CVIHVKVGNQ KLVLANLSSD  60
KMPQIPFDLV FDKEFELSHN LKSGSVHFCG YQTYIANESD EDQXDFDSES EEDLPLNFTG  120
NGNIVEAKPA PPKTNTVKPE SSGKQKVKIE EPIKDEDDSD DSDEDDSDDD ESSDEDMLGA  180
DSSDEDEEDS EEEEDTPTPK KDSKKRPNES APKTPVSAKK AKQVTPQKTD GKKGAHTATP  240
HPAKKGGKTP QTPNSAGGDH SCKTCSKSFN SDGALSSHNK AKHGAKX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23510.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355217.10.0PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I65e-68HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLM5VZI11e-110M5VZI1_PRUPE; Uncharacterized protein
STRINGGLYMA12G30600.17e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-35histone deacetylase 3